Sordo L, Santos R, Barrote I, Silva J. High CO2 decreases the long‐term resilience of the free‐living coralline algae Phymatolithon lusitanicum. Ecology and Evolution. 2018;8.

Alexandre A, Silva J, Santos R. Light is more important than nutrient ratios of fertilization for Cymodocea nodosa seedling development. Frontiers in Plant Science. 2018;9:768.

Alexandre A, Silva J, Santos R. Light Is More Important Than Nutrient Ratios of Fertilization for Cymodocea nodosa Seedling Development. Frontiers in Plant Science. 2018;9. doi:10.3389/fpls.2018.00768

Procaccini G, Ruocco M, Marín-Guirao L, et al. Depth-specific fluctuations of gene expression and protein abundance modulate the photophysiology in the seagrass Posidonia oceanica. Scientific Reports. 2017;7:42890. doi:10.1038/srep42890

Alexandre A, Silva J, Ferreira R, Paulo D, Serrão EA, Santos R. First description of seagrass distribution and abundance in São Tomé and Príncipe. Aquatic Botany. 2017;142:48 - 52. doi:10.1016/j.aquabot.2017.06.008

Olivé I, Silva J, Lauritano C, et al. Linking gene expression to productivity to unravel long- and short-term responses of seagrasses exposed to CO2 in volcanic vents. Scientific Reports. 2017;7:42278. doi:10.1038/srep42278

Sordo L, Santos R, Reis J, Shulika A, Silva J. A direct CO2 control system for ocean acidification experiments: testing effects on the coralline red algae Phymatolithon lusitanicum. PeerJ, DOI 10.7717/peerj.2503. In: Mares 2016. MARES 2016. ; 2016.

Olivé I, Silva J, Costa MM, Santos R. Estimating Seagrass Community Metabolism Using Benthic Chambers: The Effect of Incubation Time. Estuaries and Coasts. 2016;39(1):138 - 144. doi:10.1007/s12237-015-9973-z

Alexandre A, Silva J, Santos R. Nitrogen uptake in light versus darkness of the seagrass Zostera noltei : integration with carbon metabolism. Marine Ecology. 2016;37(5):1050 - 1056. doi:10.1111/maec.12351

Felisberto P, Jesus SM, Zabel F, et al. Acoustic monitoring of O2 production of a seagrass meadow. Journal of Experimental Marine Biology and Ecology. 2015;464:75 - 87. doi:10.1016/j.jembe.2014.12.013

Costa MM, Barrote I, Silva J, et al. Epiphytes Modulate Posidonia oceanica Photosynthetic Production, Energetic Balance, Antioxidant Mechanisms, and Oxidative Damage. Frontiers in Marine Science. 2015;2. doi:10.3389/fmars.2015.00111

Sandoval-Gil JM, Barrote I, Silva J, et al. Plant-water relations of intertidal and subtidal seagrasses. Marine Ecology. 2015;36(4):1294 - 1310. doi:10.1111/maec.12230

Lauritano C, Ruocco M, Dattolo E, et al. Response of key stress-related genes of the seagrass Posidonia oceanica in the vicinity of submarine volcanic vents. Biogeosciences. 2015;12(13):4185 - 4194. doi:10.5194/bg-12-4185-201510.5194/bg-12-4185-2015-supplement

Lauritano C, Ruocco M, Dattolo E, et al. Response of key stress-related genes of the seagrass Posidonia oceanica in the vicinity of submarine volcanic vents. Biogeosciences Discussions. 2015;12(6):4947 - 4971. doi:10.5194/bgd-12-4947-201510.5194/bgd-12-4947-2015-supplement

Rotini A, Belmonte A, Barrote I, et al. Effectiveness and consistency of a suite of descriptors for assessing the ecological status of seagrass meadows (Posidonia oceanica L. Delile). Estuarine, Coastal and Shelf Science. 2013;130:252 - 259. doi:10.1016/j.ecss.2013.06.015

Mazzuca S, Björk M, Beer S, et al. Establishing Research Strategies, Methodologies and Technologies to Link Genomics and Proteomics to Seagrass Productivity, Community Metabolism, and Ecosystem Carbon Fluxes. Frontiers in Plant Science. 2013;4. doi:10.3389/fpls.2013.00038

García-Marín P, Cabaço S, Hernández I, Vergara JJ, Silva J, Santos R. Multi-metric index based on the seagrass Zostera noltii (ZoNI) for ecological quality assessment of coastal and estuarine systems in SW Iberian Peninsula. Marine Pollution Bulletin. 2013;68(1-2):46 - 54. doi:10.1016/j.marpolbul.2012.12.025

García-Marín P, Cabaço S, Hernández I, Vergara JJ, Silva J, Santos R. Multi-metric index based on the seagrass Zostera noltii (ZoNI) for ecological quality assessment of coastal and estuarine systems in SW Iberian Peninsula. Mar Pollut Bull. 2013;68(1-2):46-54. doi:10.1016/j.marpolbul.2012.12.025

Vieira VMNCS, Martins F, Silva J, Santos R. Numerical tools to estimate the flux of a gas across the air–water interface and assess the heterogeneity of its forcing functions. Ocean Science. 2013;9(2):355 - 375. doi:10.5194/os-9-355-201310.5194/os-9-355-2013-supplement

Silva J, Barrote I, Costa MM, Albano S, Santos R. Physiological responses of Zostera marina and Cymodocea nodosa to light-limitation stress. PLoS One. 2013;8(11):e81058. doi:10.1371/journal.pone.0081058

Alexandre A, Silva J, Buapet P, Björk M, Santos R. Effects of CO ₂ enrichment on photosynthesis, growth, and nitrogen metabolism of the seagrass Zostera noltii. Ecology and Evolution. 2012;2(10):2625 - 2635. doi:10.1002/ece3.333

Alexandre A, Silva J, Bouma TJ, Santos R. Inorganic nitrogen uptake kinetics and whole-plant nitrogen budget in the seagrass Zostera noltii. Journal of Experimental Marine Biology and Ecology. 2011;401(1-2):7 - 12. doi:10.1016/j.jembe.2011.03.008

Alexandre A, Silva J, Santos R. Inorganic nitrogen uptake and related enzymatic activity in the seagrass Zostera noltii. Marine Ecology. 2010;31(4):539 - 545. doi:10.1111/mae.2010.31.issue-410.1111/j.1439-0485.2010.00378.x

Silva J, Sharon Y, Santos R, Beer S. Measuring seagrass photosynthesis: methods and applications. Aquatic Biology. 2009;7:127 - 141. doi:10.3354/ab00173

Sharon Y, Silva J, Santos R, Runcie JW, Chernihovsky M, Beer S. Photosynthetic responses of Halophila stipulacea to a light gradient. II. Acclimations following transplantation. Aquatic Biology. 2009;7:153 - 157. doi:10.3354/ab00148