Aurelle D, Guillemaud T, Afonso P, et al. Genetic study of Coris julis (Osteichthyes, Perciformes, Labridae) evolutionary history and dispersal abilities. C R Biol. 2003;326(8):771-85.

Zardoya R, Castilho R, Grande C, et al. Differential population structuring of two closely related fish species, the mackerel (Scomber scombrus) and the chub mackerel (Scomber japonicus), in the Mediterranean Sea. Mol Ecol. 2004;13(7):1785-98. doi:10.1111/j.1365-294X.2004.02198.x

Perrin C, Wing SR, Roy MS. Effects of hydrographic barriers on population genetic structure of the sea star Coscinasterias muricata (Echinodermata, Asteroidea) in the New Zealand fiords. Mol Ecol. 2004;13(8):2183-95. doi:10.1111/j.1365-294X.2004.02241.x

Bargelloni L, Alarcon JA, Alvarez MC, et al. The Atlantic-Mediterranean transition: discordant genetic patterns in two seabream species, Diplodus puntazzo (Cetti) and Diplodus sargus (L.). Mol Phylogenet Evol. 2005;36(3):523-35. doi:10.1016/j.ympev.2005.04.017

Martínez P, González EG, Castilho R, Zardoya R. Genetic diversity and historical demography of Atlantic bigeye tuna (Thunnus obesus). Mol Phylogenet Evol. 2006;39(2):404-16. doi:10.1016/j.ympev.2005.07.022

Magoulas A, Castilho R, Caetano S, Marcato S, Patarnello T. Mitochondrial DNA reveals a mosaic pattern of phylogeographical structure in Atlantic and Mediterranean populations of anchovy (Engraulis encrasicolus). Mol Phylogenet Evol. 2006;39(3):734-46. doi:10.1016/j.ympev.2006.01.016

Cunha RL, Grande C, Zardoya R. Neogastropod phylogenetic relationships based on entire mitochondrial genomes. BMC Evol Biol. 2009;9:210. doi:10.1186/1471-2148-9-210

Vergara-Chen C, Gonzalez-Wangüemert M, Marcos C, Pérez-Ruzafa A. Genetic diversity and connectivity remain high in Holothuria polii (Delle Chiaje 1823) across a coastal lagoon-open sea environmental gradient. Genetica. 2010;138(8):895-906. doi:10.1007/s10709-010-9472-x

Coyer JA, Hoarau G, Costa JF, et al. Evolution and diversification within the intertidal brown macroalgae Fucus spiralis/F. vesiculosus species complex in the North Atlantic. Mol Phylogenet Evol. 2011;58(2):283-96. doi:10.1016/j.ympev.2010.11.015

Borrero-Pérez GH, Gonzalez-Wangüemert M, Marcos C, Pérez-Ruzafa A. Phylogeography of the Atlanto-Mediterranean sea cucumber Holothuria (Holothuria) mammata: the combined effects of historical processes and current oceanographical pattern. Mol Ecol. 2011;20(9):1964-75. doi:10.1111/j.1365-294X.2011.05068.x

Reis DM, Cunha RL, Patrão C, Rebelo R, Castilho R. Salamandra salamandra (Amphibia: Caudata: Salamandridae) in Portugal: not all black and yellow. Genetica. 2011;139(9):1095-105. doi:10.1007/s10709-011-9609-6

Cunha RL, Coscia I, Madeira C, Mariani S, Stefanni S, Castilho R. Ancient divergence in the trans-oceanic deep-sea shark Centroscymnus crepidater. PLoS One. 2012;7(11):e49196. doi:10.1371/journal.pone.0049196

González EG, Cunha RL, Sevilla RG, Ghanavi HR, Krey G, Bautista JM. Evolutionary history of the genus Trisopterus. Mol Phylogenet Evol. 2012;62(3):1013-8. doi:10.1016/j.ympev.2011.11.032

Decker C, Olu K, Cunha RL, Arnaud-Haond S. Phylogeny and diversification patterns among vesicomyid bivalves. PLoS One. 2012;7(4):e33359. doi:10.1371/journal.pone.0033359

Costa FO, Landi M, Martins R, et al. A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal. PLoS One. 2012;7(4):e35858. doi:10.1371/journal.pone.0035858

Teixeira S, Olu K, Decker C, et al. High connectivity across the fragmented chemosynthetic ecosystems of the deep Atlantic Equatorial Belt: efficient dispersal mechanisms or questionable endemism?. Mol Ecol. 2013;22(18):4663-80. doi:10.1111/mec.12419

Silva G, Lima FP, Martel P, Castilho R. Thermal adaptation and clinal mitochondrial DNA variation of European anchovy. Proc Biol Sci. 2014;281(1792). doi:10.1098/rspb.2014.1093

Churcher AM, Hubbard PC, Marques JPedro, Canario AVM, Huertas M. Deep sequencing of the olfactory epithelium reveals specific chemosensory receptors are expressed at sexual maturity in the European eel Anguilla anguilla. Mol Ecol. 2015;24(4):822-34. doi:10.1111/mec.13065

Stefanni S, Castilho R, Sala-Bozano M, et al. Establishment of a coastal fish in the Azores: recent colonisation or sudden expansion of an ancient relict population?. Heredity (Edinb). 2015;115(6):527-37. doi:10.1038/hdy.2015.55

Junker M, Zimmermann M, Ramos AA, et al. Three in One--Multiple Faunal Elements within an Endangered European Butterfly Species. PLoS One. 2015;10(11):e0142282. doi:10.1371/journal.pone.0142282